assignment 2 bioinfo

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THE 2014 NAR DATABASE ISSUE AND AN UPDATED NAR ONLINE MOLECULAR BIOLOGY DATABASE COLLECTION

WHAT IS NAR?

ORGANISE THE ONLINE DATABASE MOSTLY IN BIOLOGICAL AND BIOINFORMATICS FIELD

HAS BEEN IDENTIFIED BY THE SPECIAL LIBRARIES ASSOCIATION (SLA) AS ONE OF THE TOP 100 MOST INFLUENTIAL JOURNALS IN BIOLOGY AND MEDICINE OVER THE LAST 100 YEARS

2014 DATABASE ISSUE

HIGHLIGTS ISSUES

ARTICLES ON BACTERIAL TAXONOMY AND METAGENOMIC

DEVELOPMENT OF THE SCOP DATABASE

UPDATE

NCBI'S MMDB DESCRIBES VAST+ (an improved tool for protein structure comparison)

STRUCTURAL DATABASES

NEW RNA BRICKS DATABASE, UPDATE ON PDBe, PDBsum, Arcdb, Genr3D, ModBase, Nucleic Acid Database AND iPfam

UPDATES ON DATABASES

CAZy, DATABASE OF GENOMIC VARIANTS, dbGaP, DRUGBANK, KEGG, miRBase, Pfam, REACTOME, SEED, TCDB, AND UniProt

DATABASES OF THE TRANSCRIPTION FACTOR BINDING SITES IN VARIOUS ORGANISM

REPORTS ON 181 DATABASES

NAR'S F1000 ARTICLES

THE FACULTY OF 1000 PROVIDES EVALUATION AND RATINGS OF HIGHLY SIGNIFICANT RESEARCH ARTICLES

NAR'S BREAKTROUGH ARTICLES

REPRESENT THE VERY BEST PAPERS IN TERMS OF

SCIENTIFIC EXCELLENCE

SIFNIFICANCE

ORIGINALITY

NAR'S TOP ARTICLES

SHOW RECENT ARTICLES

OFTEN ACCESS IN HTML AND PDF FORMATS IN SPECIFIED MONTH AND CTEGORY

UPDATED MONTHLY

CONTAIN LATEST RESTRICTION ENZYEM COLLECTION

AN OPEN ACCESS JOURNAL

NAR: NUCLEIC ACIDS RESEARCH

ASSIGNMENT 2 BIOCOMPUTATION AND BIOINFORMATICS DR SHAHIR BIN SHAMSIR

HOW ARE THE NAR DATABASE BEING ORGANIZE?

WHY DATABASE IS USEFUL TO DESCRIBE PROTEIN

PROTEIN STRUCTURE DATABASES FOR DEVELOPING THE COMPUTATIONAL METHODS USED AND IN PROVIDING A LARGE EXPERIMENTAL DATASET USED BY SOME METHODS TO PROVIDE INSIGHTS ABOUT THE FUNCTION OF A PROTEIN

CONTAIN SEQUENCE INFORMATION AND SOME DATABASES

TO ORGANIZE THE PROTEIN STRUCTURES 3D COORDINATES

DIFFERENT TYPE OF DATABASE AND DESCRIPTION

TOPPR

THE ONLINE PROTEIN PROCESSING RESOURCE

SynSysnet

SYNAPSE PROTEIN, THEIR STRUCTURE AND INTERACTIONS

SwissSideChain

NON-NATURAL AMINO ACID SIDE CHAIN FOR PROTEIN ENGINEERING

SPLICEOSOME DATABASE

SPLICEOSOME GENES AND PROTEINS, SPLICING COMPLEXES

PTMcode

FUNCTIONAL ASSOCIATIONS BETWEEN POSTTRANSLATIONAL MODIFICATIONS WITHIN PROTEIN

prePPI

PREDICTED AND EXPERIMENTALLY DETERMINDE PROTEIN-PROTEIN INTERACTIONS FOR YEAST AND HUMAN

Genome3D

DOMAIN STRUCTURE PREDICTIONS AND 3D MODELS FOR PROTEINS AND MODEL GENOME

ePros

ENERGY PROFILES OF PROTEIN STRUCTURE

EBI ENZYME PORTAL

VARIOUS KIND OF INFORMATION ABOUT ENZYMES: SMALL MOLECULE CHEMISTRY, BIOCHEMICAL PATHWAYS AND DRUG COMPOUNDS

D2P2

DATABASE OF DISORDERED PROTEIN PREDICTIONS

BioLip

BIOLOGICALLY RELEVANT LIGAND-PROTEIN INTERACTIONS